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Tatsuya Akutsu

An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data
DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition
Rtips: fast and accurate tools for RNA 2D structure prediction using integer programming
Using binding profiles to predict binding sites of target RNAs
IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming
RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming

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